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00 Archive of January Microarray SIG, Dr. Wolfgang Sommer |
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Beyond gene lists: Moving from statistical to biological significance |
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01 February Microarray SIG meeting, Dr. Richard Simon |
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Using Gene Sets Rather Than Individual Genes In DNA Microarray Analysis |
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03 Archive of March Microarray Users' SIG |
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Dr. Tanya Barrett NCBI, NLM, NIH Getting microarray data into, and out of, the GEO database Abstract: Most journals and funding agencies require that microarray data are deposited with a public repository, such as the Gene Expression Omnibus (GEO) database at NCBI. Consequently, GEO now stores data for over 160,000 microarray hybridizations and continues to grow rapidly. In this talk, I'll address the interests of both data providers and data consumers. First, I'll outline the GEO submission process, including what information submitters are asked to supply and which formats are supported. Then I'll summarize the various data mining tools and download formats we've developed to help users exploit these huge volumes of data. I'll also briefly discuss where we stand on standards, and what we plan to do with non-expression high-throughput data types. |
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3rd Millennium - ARDAS |
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ARDAS is a fully integrated solution for microarray data acquisition, management, and analysis. It includes a LIMS, a data warehouse based on Oracle, and an analysis engine based on R and bioconductor for the analysis of 2-color and Affymetrix data |
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A Dictionary of Pharmaceutical Medicine |
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Contains over 24,000 pharmaceutical, medical, biochemical, agrochemical abbreviations/acronyms and their meanings. |
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Affymetrix |
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Agilent Technologies |
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Agilent uses inkjet technology to produce deposition DNA microarrays and in-situ synthesized DNA microarrays capable of analyzing thousands of genes per array. |
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Biointerpreter - Rapid Biological Interpretation of Microarray Data |
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Biointerpreter is a powerful biological annotation and interpretation tool designed specifically for Microarray data interpretation. Biointerpreter addresses the data collection, organization and mining bottle necks and help derive the biological significance in a single click. You can extract the full value of your Microarray using user friendly web interface without any training. |
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Biological interpretation of Microarray data |
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One click custom annotation & New biological perspectives to the differentially regulated genes. |
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BioMicro |
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BioMicro developed and produces the MAUI Hybridization System, a revolutionary product that provides active mixing of the probe solution at ultra low volumes during hybridization. |
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CombiMatrix |
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Manufactures custom microarrays |
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Corning Life Sciences |
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Product & technical info for Corning lab products: Pyrex glass, quality pipette tips, filters, flasks, tubes, & high technology plastics for cell culture, genomics, and high throughput screening and Corning GAPS coated microarray slides and accessories |
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Enzo Diagnostics, Inc. |
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Labeling Systems for Nucleic Acid Arrays |
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GeneFocus, div of Biomedical Photometrics Inc |
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mfr of confocal scanner products and software for microarrays, microfluidics, tissue and materials imaging |
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GeneMachines |
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GeneMachines manufactures the OmniGrid high-throughput microarrayer and the OmniGrid Accent benchtop microarrayer. |
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GenUs BioSystems |
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GenUs BioSystems is a microarray service lab, employing GE CodeLink arrays and specializing in small sample amounts: reliable results from as few as 10 cells. |
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Microarray e-library |
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The e-library is a virtual repository that is updated on a regular basis, and contains citations, abstracts, summary information, and electronic links to complete journal articles for nearly 1,000 papers published on microarrays since the first paper appeared in Science magazine in 1995. |
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MWG Biotech |
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Manufactures products such as oligos, standard and custom microarrays, thermocylers, robotics, and has a partnership with Affymetrix to distribute arrayers and scaners. |
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MYcroarray.com |
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Mycroarray manufactures custom and catalog oligo microarrays at a very affordable price. |
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NIA DNA Array Unit |
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The NIA DNA Array Unit |
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NuGEN |
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NuGEN has a standardized system that amplifies and labels RNA in a single day, with increased sensitivity. |
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OligoArrayDb |
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Offers predesigned microarray probe sets for more than 700 genomes. Recently published in the 2009 database issue of Nucleic Acid Research |
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Plant-Arrays |
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This is a non-commercial site that focuses on array use in the plant sciences. I am maintaining this site in association with the WWW Virtual library. Tim Tranbarger |
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Point Technologies, Inc. |
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Spotting pin manufacturer offering the latest in precsion printing pins. Accelerator brand pins include; tight tolerances, radius tips (patent pending), and are made from 99.95% pure tungsten for long life. |
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QIAGEN,inc. |
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Array-Ready Oligo Sets? consist of sets of optimized, arrayable 70mer oligonucleotides that can be used as probes for thousands of genes in a particular genome. Each 70mer is designed to have optimal specificity for its target gene and is melting-temperature normalized. Custom array-optimized longmers (OPTs) can also be designed by our bioinformatics team. Features and Benefits Highly sensitive ? comparable to cDNA probes without the drawbacks of PCR amplification Excellent specificity ? sequence optimized to minimize cross-hybridization, allowing analysis of overlapping and homologous genes Normalized hybridization conditions ? melting-temperature (Tm) normalized oligo sets Eukaryotic probes biased toward the 3' end of each gene Ready to use Reliable and reproducible results Cost-effective alternative to cDNA- and PCR-based arrays |
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Quantifoil |
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Manufacturere of Microarray Substrates and Solutions(Hybridization Buffer, Spotting Solution Blocking Solution)and so on... |
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SciGene |
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Manufacturer of equipment for microarray sample preparation, hybridization and processing. |
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Spectral Genomics BAC Microarrays |
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Spectral Genomics is the market leader in Genomic BAC Microarrays used for Array CGH. Spectral arrays include those that survey the entire genome at high resolution, Spectral Chip 2600?, the Constitutional Chip?, is designed to highlight the ?hot spots? in the genome of most interest to research in chromosomal defects. |
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Stratagene website |
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Have a wide range of microarray reagents including UhRRNA recomended by NCI directors challenge as control in microarray experiments also Gene Connection link |
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TeleChem / arrayit.com |
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Manufactures ArrayIt Brand DNA Microarray products such as: Stealth Micro Spotting Pins, Hybridization Cassettes, Microarray Substrates and more... |
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Whatman Bioscience |
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Proteomic Arrays, Microspot ELISA and Antibody Arrays, Single-capture Antibody Arrays, Reverse Arrays, Protein Binder Arrays |
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