| Day |
 Date |
Time |
Location |
Topic(s) |
Speaker(s) |
| Wednesday |
11/05/08 |
10:00 a.m. |
Building 50, Room 1227 |
Systematic analysis, comparison, and integration of disease based human genetic association data and mouse genetic phenotypic information: integration with microarray data. |
Dr. Kevin Becker |
| Wednesday |
05/07/08 |
10:00 a.m. |
Building 40, Room 1201 |
Molecular Classification of Gliomas: Let the Data Inform Treatment |
Dr. Jean Claude Zenklusen |
| Wednesday |
04/09/08 |
11:00 a.m. |
Building 50, Room 1227 |
A Gene Exrpression Barcode for Microarray Data |
Rafael A Irizarry Ph.D. |
| Wednesday |
04/01/08 |
10:00 a.m. |
Building 50, Room 1227 |
An exploratory approach for assessing aberrant methylation using Affymetrix GeneChip data |
Kellie J. Archer, Ph.D. Department of Biostatistics, Virginia Commonwealth University |
| Wednesday |
02/06/08 |
10:00 a.m. |
Building 40, Room 1201 |
Design and analysis of NimbleGen tiling arrays show many novel human genes and alternative exons in embryonic stem cells |
Drs. Jean and Danielle Thierry-Mieg |
| Wednesday |
01/09/08 |
10:00 a.m. |
Building 50, Room 1227 |
Evaluation of Four Methods for Determining Signature Enrichment in Microarray Data |
Dr. Chris Cheadle |
| Wednesday |
12/05/07 |
10:00 a.m. |
Building 50, Room 1328 |
OpenBiomind: An Open-Source Software Toolkit Enabling Ensemble-Based Machine Learning Analysis of Microarray Data |
Ben Goertzel |
| Wednesday |
11/07/07 |
10:00 a.m. |
Building 40, Room 1201 |
Parsimonious Approach to Gene-Expression Microarray Analysis |
Mones Abu-Asab, Ph.D. |
| Wednesday |
09/05/07 |
10:00 a.m. |
Building 50, Room 1227 |
Towards Whole Genome and Transcriptome Studies of Single Cells using Linear Amplification Methods with Microfluidic |
Dr. Jason Kraljv |
| Wednesday |
05/02/07 |
10:00 a.m. |
Building 50, Room 1227 |
The human mitochondria-focused cDNA microarray - hMitChip |
Dr. Irini Manoli |
| Wednesday |
04/04/07 |
10:00 a.m. |
Building 50, Room 1227 |
Technical Variation in Modeling the Joint Expression of Several Genes |
Dr. Walter Liggett |
| Wednesday |
03/07/07 |
10:00 a.m. |
Building 50, Room 1227 |
Getting microarray data into, and out of, the GEO database |
Tanya Barrett, Ph.D. NCBI, NLM, NIH |
| Wednesday |
02/15/07 |
1:00 p.m. |
Building 50, Room 1227 |
Using Gene Sets Rather Than Individual Genes In DNA Microarray Analysis |
Dr. Richard Simon |
| Wednesday |
01/10/07 |
10:00 a.m. |
Building 50, Room 1227 |
Beyond gene lists: Moving from statistical to biological significance |
Dr. Wolfgang Sommer |
| Wednesday |
10/04/06 |
10:00 a.m. |
Building 50, Room 1227 |
caArray microarray database in the cancer Biomedical Informatics Grid (caBIG) |
Dr. Mervi Heiskanen |
| Wednesday |
09/06/06 |
10:00 a.m. |
Building 50, Room 1227 |
DIANE : A flexible platform for advanced microarray analysis |
Dr. Vinayakumar V. Prabhu |
| Wednesday |
06/07/06 |
10:00 am |
Building 50, Room 1227 |
June Microarray User's SIG seminar: ERCC, MAQC, P, A, PM & MM - A Potpourri of Acronyms and Abbreviations That Are Important In The Future Of Your Microarrays |
Dr. Ernest Kawasaki |
| Wednesday |
05/03/06 |
10:00 am |
Building 50, Rm1227 |
Leveraging the Microarray Facility |
Timothy G. Myers, Ph.D., NIAID |
| Wednesday |
04/05/06 |
10:00 am |
Building 50, Room 1227 |
April Microarray Users' SIG seminar: SNP Arrays. Beyond Haplotypes. |
Jean Claude Zenklusen, PH.D, NCI |
| Wednesday |
03/01/06 |
10:00 am |
Building 50, Room 1227 |
Analysis of DNA Microarray Data Using BRB-ArrayTools |
Richard Simon, D.Sc., NCI |
| Wednesday |
02/01/06 |
10:00 a.m. |
Building 50, Room 1227 |
It’s a mixed-up, muddled-up, microarray annotation world, . . .except for LOLA. |
Tim McCaffrey, Ph.D. |
| Thursday |
01/19/06 |
12:30 p.m. |
Building 37th, 5th floor sunroom |
Journal Club: expression analysis and SNPs. Am. J. Hum. Genet. 75:885–890, 2004 Nature 2005 Oct 27;437(7063):1365-9 |
Dr. Mark Reimers |
| Wednesday |
01/11/06 |
10:00 am |
Building 50, Room 1227 |
January Microarray SIG seminar. New methods for significance testing of microarray data: genes and groups |
Dr. Mark Reimers |
| Thursday |
12/15/05 |
12:30 PM |
Building 37, 5th floor |
Journal Club: Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50 |
Dr. Chris Cheadle |
| Wednesday |
12/07/05 |
10:00 a.m. |
Building 50, room 1227 |
The MicroArray Quality Control Project: Cross-Platform Comparison Based on Probe Sequence Information |
Dr. Damir Herman |
| Thursday |
12/01/05 |
12:30 p.m. |
Building 37, 5th floor |
A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae) Olga G. Troyanskaya*, Kara Dolinski*†, Art B. Owen‡, Russ B. Altman*§, and David Botstein PNAS 100(14): 8348-8353, 2005. |
Journal Club |
| Thursday |
11/17/05 |
12:30 PM |
Building 37, 5th floor sunroom |
Data-adaptive test statistics for microarray data Bioinformatics, Vol 21, Supplement 2, Sept. 2005, pp. ii108-ii114 |
Alan Berger, Ph.D. |
| Wednesday |
11/01/05 |
10:00 a.m. |
Building 50, Room 1227 |
UniGene: a unified view of the transcriptome |
Gregory D. Schuler, PhD , NCBI, NLM, NIH |
| Wednesday |
08/03/05 |
10:00 a.m. |
Building 50, Room 1227 |
An Update on the ERCC and External RNA Controls: Some examples of their use. |
Ernest S. Kawasaki, PhD |
| Thursday |
06/16/05 |
12:30 p.m. |
Building 37, 5th floor sunroom |
Journal Club Hart et al. NAR 33 (8): 2580-2594. 2005. A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data. |
Group discussion |
| Thursday |
06/09/05 |
12:30 p.m |
Building 37, 5th floor sunroom |
Journal Club Nature Methods (May 2005) Larkin et al., Irizarray et al., the Toxicogenomics Research Consortium, Vol. 2: 337-356. |
Group discussion |
| Wednesday |
06/01/05 |
10:00 a.m. |
Building 50, Room 1227 |
Microarray studies: Can they be reproduced? Can they be combined? |
Dr. Giovanni Parmigiani, Johns Hopkins University |
| Wednesday |
05/11/05 |
10:00 a.m. |
Building 50, Room 1227 |
NIST Program in Metrology for Gene Expression |
Dr. Marc Salit |
| Wednesday |
05/04/05 |
12:30 pm |
Building 37, 5th floor sunroom |
Journal Club |
Mark Reimers, discussion leader |
| Wednesday |
04/06/05 |
10:00 a.m. |
Buildling 50, Room 1227 |
Amplification of small quantities of total RNA for down-stream application to microarray platforms |
Audrey Player, Ph.D. NCI, Microarray Facility |
| Thursday |
03/17/05 |
12:30 pm |
Building 37, 5th floor sunroom |
Journal Club Liat Ein-Dor, Itai Kela, Gad Getz, David Givol and Eytan Domany, Outcome Signature Genes in Breast Cancer: is there a unique set? Bioinformatics Vol 21, no. 2 Jan 2005 pp. 171-178 |
Alan Berger |
| Wednesday |
03/02/05 |
10:00 a.m. |
Building 50, Room 1227 |
Probe Level Statistical Quality Assessment of Microarrays. AND Amplification and Expression in Cancer Cell Lines |
Mark Reimers Ph.D. |
| Thursday |
02/17/05 |
12:30 p.m. |
Building 37, 5th floor sun room |
Journal Club http://genomebiology.com/2003/4/10/R67 http://genomebiology.com/2005/6/2/R16 |
Mark Reimers and Marc Salit |
| Thursday |
02/03/05 |
12:30 pm |
Building 37, 5th floor sun room |
Journal club: Paper: van de Peppel et al. Monitoring global messenger RNA changes in externally controlled microarray experiments. EMBO Reports 4 (#4) 387-393 April 2003. |
discussion leader: Katherine Peterson |
| Wednesday |
02/02/05 |
10:00 a.m. |
Building 50, Room 1227 |
Design of Array-Ready Oligo Set for the Mouse Genome |
Dr. Fei Zhong |
| Thursday |
01/19/05 |
12:30 pm |
Building 37, 5th floor |
Journal Club, SNPs and expression profiling. Am. J. Hum. Genet. 75:885–890, 2004 Nature 2005 Oct 27;437(7063):1365-9 |
Mark Reimers |
| Thursday |
01/06/05 |
12:30 |
Building 37, 5th floor sunroom |
Follow up journal club to Dr. Colantuoni's seminar. |
Interested members |
| Wednesday |
01/05/05 |
10:00 a.m. |
Building 50, Room 1227 |
Increasing Signal and Reducing Noise in the Search for Small Effects in Genome-Wide Expression Patterns: Methods and Examples |
Dr. Carlo Colantuoni |
| Wednesday |
11/03/04 |
10:00 a.m. |
Bulding 50, Room 1227 |
From Affymetrix Probe-level data to list of interesting genes |
Dr. Rafael A. Irizarry |
| Thursday |
10/21/04 |
12:30 p.m. |
Building 37, 5th floor sun room |
Journal Club/MMRT: A follow-up discussion of “Regional Biases on Microarrays and Quality Assessment”. |
Journal club/discussion |
| Thursday |
10/21/04 |
5:30 p.m. |
Building 10, room 2S235 |
MMRT Main Meeting: “Envisioning the future: the tools we need for advanced gene expression data analysis, visualization, and data mining”. Open forum and team organization. |
MMRT meeting |
| Wednesday |
10/12/04 |
10:00 a.m. |
Building 50, Room 1227 |
Regional Biases on Microarrays and Quality Assessment |
Dr. Mark Reimers |
| Thursday |
10/07/04 |
10:30 a.m. |
Building 9, Room 1S112 |
SpotReader, a new microarray feature extraction program for Windows, demonstration. |
Mr. Richard Niles |
| Thursday |
10/07/04 |
12:00 pm |
Building 37, 5th floor sun room |
Follow-up discussion on comparing data from different labs. Administrative business regarding Microarray SIG journal club. |
Discussion group |
| Wednesday |
10/06/04 |
10:00 a.m. |
Building 50, room 1227 |
Comparing Microarray Data Generated in Different Laboratories |
Dr. Laura Reid |
| Wednesday |
08/04/04 |
10:00 am |
Bldg 10, Lipsett Amphitheater |
ChipQC: A visualization tool for removal of systematic error and artifacts in microarrays |
Margaret C. Cam, Ph.D. |
| Wednesday |
06/02/04 |
10:00 a.ml |
Lipsett Amiphtheater |
LCM, microarray and the precise definition of a cancer cell |
Dr. Audrey Player |
| Wednesday |
06/02/04 |
noon |
Bldg.37, Room 3.1 |
Microarray Users' Journal Club, Cluster Analysis |
Alan Berger and Mark Reimers |
| Wednesday |
05/05/04 |
10:00 a.m. |
Building 10, Lipsett Amphitheater |
Microdissection and RNA Amplification for Microarray Experiments |
Carolyn Best, Ph.D. |
| Wednesday |
03/03/04 |
10:00 a.m. |
Bldg. 10, Lipsett Amphitheater |
Gene Expression Profiling of Formalin-fixed, Paraffin-embedded Archival Tissue Following Laser Capture Microdissection. |
Dr. Renata Coudry |
| Tuesday |
02/24/04 |
noon |
Bldg 37, room 5.1 (the solarium) |
Journal Club. Topic: identifying which genes are differently expressed between two groups of samples. |
Dr. Mark Reimers |
| Wednesday |
02/04/04 |
10:00 |
Bldg. 10, Lipsett |
Monthly SIG meeting. Discussion group. Beginning array experiments. |
Open Discussion |
| Wednesday |
12/03/03 |
10:00 am |
Balcony C The Natcher Center |
Mathematical Modeling and Statistical Analysis of Transcriptomes Based on SAGE Data |
Vladimir A. Kuznetsov, Ph.D., Sci.D. |
| Friday |
11/07/03 |
10:00 a.m. |
Building 50, Room 1227 |
Modeling sources of variability in microarray data: From from differential expression to cluster analysis |
Mario Medvedovic, Ph.D. |
| Wednesday |
11/05/03 |
10:00 -11:00 |
Building 45, Natcher, E1/E2 |
Integrating gene expression and proteomic data with other biological data types: Human disease associations, Literature mining, and Biological pathways. |
Kevin Becker |
| Wednesday |
10/01/03 |
10:00 a.m. |
Lipsett Auditorium |
COMPARISON OF THREE MICROARRAY PLATFORMS: A PRELIMINARY ANALYSIS |
Ernie Kawasaki, Head, Microarray Facility |
Wednesday
 |
09/03/03 |
10:00-11:00 am |
Bldg. 10 Lipsett Amphitheater |
Use of cDNA arrays to discriminate between transcriptional and post-transcriptional gene regulation. |
Myriam Gorospe, PhD |
| Wednesday |
08/06/03 |
10:00 am |
Bldg. 10 Lipsett Amphitheater |
Experimental Design and Microarrays - A Round-Table Discussion |
Kevin Dobbin (NCI), Shyam Sundaram (CIT and SRA Intl.), and Rich Lempicki (NIAID) |
Friday
|
10/11/02 |
8:45 a.m. - 4:30 p.m. |
Natcher Conference Center |
SYMPOSIUM ON PHENOTYPING MOUSE CARDIOVASCULAR FUNCTION AND DEVELOPMENT www.nhlbi.nih.gov/meetings/mouse |
Symposium |
Thursday
|
10/10/02 |
8:45 a.m. - 4:30 p.m. |
Natcher Conference Center |
SYMPOSIUM ON PHENOTYPING MOUSE CARDIOVASCULAR FUNCTION AND DEVELOPMENT www.nhlbi.nih.gov/meetings/mouse |
Symposium |
| Wednesday |
03/13/02 |
9:00 a.m. |
Natcher Conference Room D |
Massively parallel signature sequencing (MPSS) as a tool for in-depth quantitative gene expression profiling for systems biology applications. |
Rick Woychik, Ph.D. Chief Scientific Officer, Lynx Therapeutics |
| Wednesday |
12/05/01 |
9:30 a.m. |
Lipsett Auditorium |
Gene Expression Profiling for Biological Pathways Using GEArray Systems |
Sean Yu Ph.D. |
| Tuesday |
11/14/00 |
12 noon |
Conte Bldg. 49, Conf. Rm 1A/B |
Analysis of gene expression in brain using DRAGON, a novel database tool (DRAGON: Database Referencing of Array Genes Online) www.kennedykrieger.org/pevsnerlab/ |
Jonathan Pevsner, PhD |
Monday
|
03/13/00 |
8:30-3:00 pm |
Bld10/Lipsett Auditorium |
Questions? Contact Michael Megginson Voice: 978-439-5511 x6067 Office: 301-947-7855 |
GSI Lumonics Microarray Workshop |
| Tuesday |
02/01/00 |
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Monday
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09/13/99 |
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Statistical analysis of cDNAs using PSCAN |
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Monday
|
08/01/99 |
|
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Fluorescent vs. Radioactive hybridization techniques |
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